STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0941Hypothetical protein; Identified by Glimmer2; putative. (83 aa)    
Predicted Functional Partners:
SPO1089
Hypothetical protein; Identified by similarity to GB:AAN33382.1; match to protein family HMM PF04325.
  
    0.883
SPO0942
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.875
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.848
SPO0224
Polyphosphate kinase, putative; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with GDP, but it can also use ADP, CDP and UDP.
   
    0.836
ppk2
Polyphosphate kinase 2; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with ADP, but it can also use GDP, CDP and UDP.
   
    0.836
SPO1727
Polyphosphate kinase 2, putative; Uses inorganic polyphosphate (polyP) as a donor to convert NDP to NTP. PolyP hydrolysis is slightly faster with UDP, but it can also use ADP, GDP and CDP.
   
    0.836
ompW
Outer membrane protein OmpW; Identified by similarity to SP:P17266; match to protein family HMM PF03922.
  
    0.728
SPO2237
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.657
SPO0462
Antibiotic biosynthesis monooxygenase domain protein.
  
     0.620
SPO3522
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; Identified by similarity to SP:P18396; match to protein family HMM PF00037.
   
    0.590
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.