STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0942Hypothetical protein; Identified by Glimmer2; putative. (85 aa)    
Predicted Functional Partners:
SPO0941
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.875
SPO0285
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.701
SPO1126
Cytochrome c family protein.
  
     0.606
SPO3293
Hypothetical protein; Identified by similarity to GB:AAM36995.1.
  
     0.565
SPO1807
Exonuclease, DNA polymerase III, epsilon subunit family; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.
  
     0.556
SPO0940
Hypothetical protein; Identified by similarity to PIR:T27104; match to protein family HMM PF01205.
       0.512
SPO0939
Peptidase, M48 family; Identified by match to protein family HMM PF01435.
       0.501
SPO3310
Hypothetical protein; Identified by similarity to GB:BAC53154.1.
  
     0.472
SPO3333
Hypothetical protein; Identified by similarity to GB:AAR38409.1.
  
     0.460
SPO1909
Hypothetical protein; Identified by similarity to PIR:AB2272.
  
     0.459
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.