STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0945Identified by match to protein family HMM PF05170. (645 aa)    
Predicted Functional Partners:
SPO3430
Outer membrane porin; Identified by similarity to GB:CAA70599.1.
  
     0.674
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.651
rimO
RNA modification enzyme, MiaB-family; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
       0.627
SPO2084
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.589
SPO0021
Hpt domain protein; Identified by match to protein family HMM PF01627.
 
     0.517
SPO2166
Lipoprotein, putative.
  
     0.483
nthB
Nitrile hydratase beta subunit; NHase catalyzes the hydration of various nitrile compounds to the corresponding amides; Belongs to the nitrile hydratase subunit beta family.
  
     0.456
SPO3372
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.427
SPO1316
Hypothetical protein; Identified by similarity to GB:BAC49761.1.
 
     0.423
SPO0398
Hypothetical protein; Identified by similarity to GB:BAC45936.1.
  
    0.407
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.