Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kpsECapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. (392 aa)    
Predicted Functional Partners:
kpsT
Capsular polysaccharide export ATP-binding protein; Identified by similarity to SP:P10640; match to protein family HMM PF00005.
 
 
 0.996
SPO0040
ABC transporter, permease protein.
 
  
 0.976
SPO1756
Polysaccharide biosynthesis/export protein; Identified by match to protein family HMM PF02563.
 
  
 0.974
kpsC
Capsular polysaccharide export protein KpsC; Identified by similarity to SP:P42217; match to protein family HMM PF05159.
 
  
 0.967
kdsA
3-deoxy-8-phosphooctulonate synthase; Identified by similarity to SP:Q46225; match to protein family HMM PF00793; match to protein family HMM TIGR01362; Belongs to the KdsA family.
  
    0.845
kpsS
Capsular polysaccharide export protein KpsS; Identified by similarity to SP:P42218; match to protein family HMM PF05159.
 
 
 
 0.845
SPO1034
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.819
SPO0036
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
    0.792
SPO0037
Hypothetical protein; Identified by similarity to GB:CAC46616.1.
 
    0.792
SPO3319
epsK domain protein; Identified by similarity to GB:AAC44018.1; match to protein family HMM PF02485.
 
    0.777
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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