Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO0951Hypothetical protein; Identified by Glimmer2; putative. (262 aa)    
Predicted Functional Partners:
SPO0950
uracil-DNA glycosylase, putative; Identified by similarity to GB:CAD29336.1; match to protein family HMM PF03167.
       0.836
SPO0393
Identified by match to protein family HMM PF01694.
  
     0.765
SPO1243
Hypothetical protein; Identified by similarity to GB:AAR38391.1.
  
     0.764
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.758
SPO0896
Hypothetical protein; Identified by similarity to GB:AAK25555.1.
  
     0.754
SPO0373
Helicase, ATP-dependent, putative.
  
     0.743
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.737
SPO2075
Hypothetical protein; Identified by similarity to GB:AAL26882.1.
  
     0.734
SPO1097
Hypothetical protein; Identified by similarity to PIR:C98286.
  
     0.732
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.706
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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