Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SPO0967 | SPO0968 | SPO0967 | SPO0968 | Identified by match to protein family HMM PF01384. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.789 |
| SPO0968 | SPO0967 | SPO0968 | SPO0967 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Identified by match to protein family HMM PF01384. | 0.789 |
| SPO0968 | SPO1867 | SPO0968 | SPO1867 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Hypothetical protein; Identified by similarity to GB:AAK25209.1. | 0.459 |
| SPO0968 | SPO2478 | SPO0968 | SPO2478 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | 0.426 |
| SPO0968 | SPO3833 | SPO0968 | SPO3833 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.426 |
| SPO0968 | nnrD | SPO0968 | SPO2293 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.765 |
| SPO0968 | rhlE | SPO0968 | SPO1443 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | ATP-dependent RNA helicase RhlE; Identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.426 |
| SPO0968 | rnr | SPO0968 | SPO3330 | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.529 |
| SPO1867 | SPO0968 | SPO1867 | SPO0968 | Hypothetical protein; Identified by similarity to GB:AAK25209.1. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.459 |
| SPO2478 | SPO0968 | SPO2478 | SPO0968 | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.426 |
| SPO2478 | nnrD | SPO2478 | SPO2293 | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.800 |
| SPO2478 | rhlE | SPO2478 | SPO1443 | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | ATP-dependent RNA helicase RhlE; Identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.909 |
| SPO2478 | rnr | SPO2478 | SPO3330 | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.645 |
| SPO3833 | SPO0968 | SPO3833 | SPO0968 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.426 |
| SPO3833 | nnrD | SPO3833 | SPO2293 | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.800 |
| nnrD | SPO0968 | SPO2293 | SPO0968 | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.765 |
| nnrD | SPO2478 | SPO2293 | SPO2478 | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | RNA helicase; 'Novel gene detected by proteogenomics, SPO_PG024; identified in over 20 other Roseobacter strains'. | 0.800 |
| nnrD | SPO3833 | SPO2293 | SPO3833 | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | ATP-dependent RNA helicase, DEAD/DEAH box family; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; Belongs to the DEAD box helicase family. | 0.800 |
| nnrD | rhlE | SPO2293 | SPO1443 | YjeF family protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | ATP-dependent RNA helicase RhlE; Identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | 0.800 |
| rhlE | SPO0968 | SPO1443 | SPO0968 | ATP-dependent RNA helicase RhlE; Identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family. | Hydrolase, NUDIX family; Identified by match to protein family HMM PF00293. | 0.426 |
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