STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0971Oxidoreductase, GMC family; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199. (534 aa)    
Predicted Functional Partners:
betB
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
 
 0.956
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
  
  
 
0.913
iseJ
Isethionate dehydrogenase; Identified by match to protein family HMM PF00732; match to protein family HMM PF05199; PMID: 19933343.
  
  
 
0.904
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
  
 0.629
betI-2
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
  
  
 0.570
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
  
 0.559
apqZ
Aquaporin Z; Identified by similarity to SP:P48838; match to protein family HMM PF00230; match to protein family HMM TIGR00861; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
  
 0.549
SPO3400
Identified by match to protein family HMM PF01571; Belongs to the GcvT family.
  
  
 0.548
SPO0621
Ankrin repeat protein.
    
 0.515
fhs-1
Formate--tetrahydrofolate ligase; Identified by similarity to SP:Q59925; match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family.
   
  
 0.474
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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