STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0975Hypothetical protein; Identified by Glimmer2; putative. (148 aa)    
Predicted Functional Partners:
SPO0976
Identified by match to protein family HMM PF04314.
 
    0.858
rpmB
Ribosomal protein L28; Identified by similarity to SP:P02428; match to protein family HMM PF00830; match to protein family HMM TIGR00009; Belongs to the bacterial ribosomal protein bL28 family.
       0.669
SPO1427
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.650
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.624
SPO2471
Acetyltransferase, GNAT family; Identified by match to protein family HMM PF00583.
  
     0.557
SPO0915
Hypothetical protein; Identified by similarity to PIR:AB2631.
  
     0.521
SPO0074
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.507
SPO1909
Hypothetical protein; Identified by similarity to PIR:AB2272.
  
     0.484
SPO1747
Sarcosine oxidase, gamma subunit family; Identified by match to protein family HMM PF04268.
  
     0.475
SPO2778
Hypothetical protein; Identified by similarity to SP:P29907.
  
    0.420
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.