STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO0980Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (319 aa)    
Predicted Functional Partners:
SPO0981
Histidinol dehydrogenase, putative; Identified by match to protein family HMM PF00815.
       0.550
SPO3502
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.528
SPO2961
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.527
SPO1295
Aminotransferase, DegT/DnrJ/EryC1/StrS family; Identified by match to protein family HMM PF01041; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.520
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.503
SPO0019
Membrane protein, putative.
  
     0.497
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.491
naaR
Transcriptional regulator, LysR family; PMID: 21757489; Belongs to the LysR transcriptional regulatory family.
  
     0.489
SPO0462
Antibiotic biosynthesis monooxygenase domain protein.
  
     0.484
SPO3503
Hypothetical protein; Identified by similarity to GB:AAC44076.1.
  
     0.480
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.