STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znuAZinc ABC transporter, periplasmic zinc-binding protein; Identified by similarity to SP:P39172; match to protein family HMM PF01297. (322 aa)    
Predicted Functional Partners:
znuC
Zinc ABC transporter, ATP-binding protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.998
znuB
Zinc ABC transporter, permease protein; Identified by similarity to SP:P39832; match to protein family HMM PF00950.
 
 
 0.991
sitB
Manganese ABC transporter, ATP-binding protein; Identified by similarity to SP:P96117; match to protein family HMM PF00005.
 
  
 0.922
zur
Zinc uptake regulation protein; Part of a zinc ABC transporter gene cluster; identified by similarity to SP:P32692; Belongs to the Fur family.
 
  
 0.871
sitD
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAK33470.1; match to protein family HMM PF00950.
 
  
 0.850
sitC
Manganese ABC transporter, permease protein; Identified by similarity to GB:AAS11742.1; match to protein family HMM PF00950.
 
  
 0.818
senC
Regulatory protein SenC; Identified by similarity to SP:Q52720; match to protein family HMM PF02630.
 
      0.576
dksA
dnaK suppressor protein, putative; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
  
  
 0.552
secE
Preprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
      
 0.529
fnrL
Transcriptional activator protein FnrL; Identified by similarity to SP:P51007; match to protein family HMM PF00027; match to protein family HMM PF00325.
      
 0.505
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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