Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO0989Transcriptional regulator SoxR; Identified by match to protein family HMM PF01022. (128 aa)    
Predicted Functional Partners:
soxS
Regulatory protein SoxS; Identified by similarity to GB:AAO11779.1.
 
     0.774
SPO0988
YeeE/YedE family protein; Identified by similarity to SP:P33015; match to protein family HMM PF04143.
 
   
 0.739
soxW
Thioredoxin SoxW; Identified by similarity to GB:CAB94378.1.
 
     0.592
soxV
Sulfur oxidation V protein; Identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683.
 
   
 0.522
SPO1030
Identified by match to protein family HMM PF00753.
 
   
 0.467
SPO0794
Copper-translocating P-type ATPase; Identified by similarity to SP:P37279; match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
  
  
 0.463
soxA
Diheme cytochrome c SoxA; Identified by similarity to GB:AAF99434.1.
 
   
 0.434
soxX
Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034.
 
   
 0.408
soxZ
Sulfur oxidation Z protein; Identified by similarity to GB:CAB94381.1.
 
   
 0.405
soxY
Sulfur oxidation Y protein; Identified by similarity to GB:CAB94380.1; match to protein family HMM TIGR01409.
 
     0.402
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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