STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
soxVSulfur oxidation V protein; Identified by similarity to GB:AAF99429.1; match to protein family HMM PF02683. (245 aa)    
Predicted Functional Partners:
soxW
Thioredoxin SoxW; Identified by similarity to GB:CAB94378.1.
 
   
 0.810
soxS
Regulatory protein SoxS; Identified by similarity to GB:AAO11779.1.
 
   
 0.750
SPO2314
Periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily; Identified by match to protein family HMM TIGR00385.
 
  
 0.714
SPO0331
Thiol:disulfide interchange protein, putative; Identified by similarity to SP:P43221.
 
  
 0.691
soxX
Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034.
 
   
 0.639
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.556
soxZ
Sulfur oxidation Z protein; Identified by similarity to GB:CAB94381.1.
 
   
 0.553
soxY
Sulfur oxidation Y protein; Identified by similarity to GB:CAB94380.1; match to protein family HMM TIGR01409.
 
   
 0.529
SPO0989
Transcriptional regulator SoxR; Identified by match to protein family HMM PF01022.
 
   
 0.522
SPO0988
YeeE/YedE family protein; Identified by similarity to SP:P33015; match to protein family HMM PF04143.
 
     0.514
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.