STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1006NADH dehydrogenase subunit, putative; Identified by similarity to SP:O97725; match to protein family HMM PF05071. (127 aa)    
Predicted Functional Partners:
SPO1008
Hypothetical protein; Identified by similarity to GB:AAN29832.1.
 
     0.897
SPO1007
Identified by match to protein family HMM PF02470.
     
 0.857
SPO0482
NADH-ubiquinone oxidoreductase family protein.
  
    0.810
SPO0518
Hypothetical protein; Identified by similarity to GB:BAC50629.1.
  
   
 0.730
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
    0.730
SPO0072
Hypothetical protein; Identified by similarity to GB:CAE26039.1.
  
     0.636
SPO0956
Hypothetical protein; Identified by similarity to PIR:AI3454.
  
   
 0.598
nuoG
NADH dehydrogenase I, G subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family.
  
     0.598
SPO1005
Identified by match to protein family HMM PF01042.
       0.567
cycM
Cytochrome c552; Identified by similarity to SP:P54820; match to protein family HMM PF00034.
  
     0.561
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.