STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1008Hypothetical protein; Identified by similarity to GB:AAN29832.1. (119 aa)    
Predicted Functional Partners:
SPO1006
NADH dehydrogenase subunit, putative; Identified by similarity to SP:O97725; match to protein family HMM PF05071.
 
     0.897
SPO1007
Identified by match to protein family HMM PF02470.
       0.861
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
       0.678
SPO3348
Hypothetical protein; Identified by similarity to GB:CAD85590.1.
  
     0.575
SPO2959
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.554
SPO1005
Identified by match to protein family HMM PF01042.
       0.553
SPO3886
Transporter, Tim44 family; Identified by similarity to PIR:AG3508; match to protein family HMM PF04280.
  
     0.548
SPO0910
Hypothetical protein; Identified by similarity to GB:CAE29805.1.
  
     0.533
atpF
ATP synthase F0, B subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
     0.510
SPO2285
DNA-binding protein, putative; Identified by match to protein family HMM PF01381.
  
     0.507
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.