SPO1014 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1014

AMP-binding enzyme; Identified by match to protein family HMM PF00501. (502 aa)

Predicted Functional Partners:

SPO0849

0.903

SPO1013

0.861

SPO0778

0.848

SPO1847

0.846

SPO3296

0.844

SPO1015

0.826

SPO0847

0.791

fabD

0.606

SPO1012

0.550

SPO0833

0.524

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0778	SPO0833	SPO0778	SPO0833	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.	0.524
SPO0778	SPO0847	SPO0778	SPO0847	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.941
SPO0778	SPO0849	SPO0778	SPO0849	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.974
SPO0778	SPO1014	SPO0778	SPO1014	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.848
SPO0778	SPO1847	SPO0778	SPO1847	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.861
SPO0778	SPO3296	SPO0778	SPO3296	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.836
SPO0778	fabD	SPO0778	SPO2276	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.715
SPO0833	SPO0778	SPO0833	SPO0778	Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	0.524
SPO0833	SPO1014	SPO0833	SPO1014	Formate dehydrogenase, beta subunit; Identified by similarity to GB:AAN03798.1; match to protein family HMM PF01257; match to protein family HMM PF01512.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.524
SPO0847	SPO0778	SPO0847	SPO0778	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	0.941
SPO0847	SPO0849	SPO0847	SPO0849	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	0.996
SPO0847	SPO1014	SPO0847	SPO1014	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.791
SPO0847	fabD	SPO0847	SPO2276	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.533
SPO0849	SPO0778	SPO0849	SPO0778	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	long-chain-fatty-acid--CoA ligase, putative; Identified by similarity to SP:P94547; match to protein family HMM PF00501.	0.974
SPO0849	SPO0847	SPO0849	SPO0847	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.996
SPO0849	SPO1014	SPO0849	SPO1014	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.903
SPO0849	SPO1847	SPO0849	SPO1847	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.418
SPO0849	SPO3296	SPO0849	SPO3296	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	AMP-binding enzyme; Identified by match to protein family HMM PF00501.	0.418
SPO0849	fabD	SPO0849	SPO2276	Non-ribosomal peptide synthase; Identified by similarity to GB:CAD70195.1; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF00975; match to protein family HMM PF02801.	Malonyl CoA-acyl carrier protein transacylase; Identified by similarity to SP:P71019; match to protein family HMM PF00698; match to protein family HMM TIGR00128.	0.990
SPO1012	SPO1013	SPO1012	SPO1013	Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.	Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.	0.551

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About