Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO10153-hydroxybutyrate dehydrogenase, putative; Identified by similarity to SP:O86034; match to protein family HMM PF00106. (267 aa)    
Predicted Functional Partners:
dxnH
3-oxoadipate CoA-succinyl transferase, beta subunit; Identified by similarity to GB:CAA51373.1; match to protein family HMM PF01144.
 
 0.921
dxnG
3-oxoadipate CoA-succinyl transferase, alpha subunit; Identified by similarity to GB:CAA51372.1; match to protein family HMM PF01144.
 
 
 0.916
mvaB
hydroxymethylglutaryl-CoA lyase; Identified by similarity to SP:P13703; match to protein family HMM PF00682.
  
 
 0.915
bdh-1
D-beta-hydroxybutyrate dehydrogenase; Identified by similarity to SP:O86034; match to protein family HMM PF00106; match to protein family HMM TIGR01963.
  
  
 
0.908
SPO1959
acetoacetyl-CoA synthase; Identified by similarity to SP:Q9Z3R3; match to protein family HMM PF00501; match to protein family HMM TIGR01217.
   
 0.906
SPO1014
AMP-binding enzyme; Identified by match to protein family HMM PF00501.
 
   0.826
SPO1013
Identified by match to protein family HMM PF00108; match to protein family HMM PF02803; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.813
SPO1012
Transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196.
       0.548
SPO2487
3-hydroxyacyl-CoA dehydrogenase, type II; Identified by similarity to SP:O02691; match to protein family HMM PF00106; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.492
SPO2679
Oxidoreductase, short-chain dehydrogenase/reductase family; Identified by match to protein family HMM PF00106.
 
    0.436
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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