STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1018Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22730; match to protein family HMM PF00005. (251 aa)    
Predicted Functional Partners:
SPO1019
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.994
SPO0824
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.986
SPO1850
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.971
SPO1020
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.963
SPO2530
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to SP:P22729; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.955
SPO3709
Branched-chain amino acid ABC transporter, permease protein; Identified by similarity to GB:CAE29842.1; match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.952
livF-1
Branched-chain amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:P22731; match to protein family HMM PF00005.
  
0.934
SPO1021
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
 
  
 0.922
SPO3292
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.907
SPO1833
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
  
 0.840
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.