Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1022Transcriptional regulator, putative; Identified by match to protein family HMM PF01381. (432 aa)    
Predicted Functional Partners:
SPO1025
Sensor histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
 
   
 0.813
SPO1024
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.750
SPO1023
Response regulator; Identified by match to protein family HMM PF00072.
 
   
 0.737
SPO1021
Assignment partly based on membership in branched-chain amino acid ABC transporter gene cluster; identified by match to protein family HMM TIGR01409.
 
     0.631
SPO2202
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
  
 0.598
SPO1026
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.593
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.554
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
  
 0.516
SPO1032
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.512
SPO1019
Branched-chain amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
     0.509
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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