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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1026Hypothetical protein; Identified by Glimmer2; putative. (388 aa)    
Predicted Functional Partners:
SPO0198
ABC transporter, ATP-binding protein, flagellar, putative.
 
 
 0.982
fliG
Flagellar motor switch protein FliG; Identified by similarity to SP:P23448; match to protein family HMM PF01706.
 
 
 0.947
SPO3462
Flagellar hook-length control protein; Identified by match to protein family HMM PF02120.
 
  
 0.935
SPO3461
Flagellar protein FlgJ, putative; Identified by similarity to SP:P75942.
 
  
 0.918
SPO0193
Flagellar hook-associated protein FlgK, putative; Identified by similarity to SP:P33235; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
 
 
 0.898
fliI
H+-transporting two-sector ATPase, flagellum-specific; Identified by similarity to SP:P26465; match to protein family HMM PF00006; match to protein family HMM TIGR01026.
  
 
 0.896
fliE
Flagellar hook-basal body complex protein FliE, putative; Identified by similarity to SP:P24502.
 
  
 0.889
flgD
Basal-body rod modification protein FlgD; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.888
fliL
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
  
 0.887
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P24501; match to protein family HMM PF00460; match to protein family HMM PF06429; Belongs to the flagella basal body rod proteins family.
  
 
 0.884
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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