Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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co-expression
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gene co-occurrence
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SPO1027Putative protein TIGR01244; Identified by similarity to PIR:T10511; match to protein family HMM PF04273; match to protein family HMM TIGR01244. (143 aa)    
Predicted Functional Partners:
SPO1612
Twin-arginine translocation pathway signal sequence domain protein; Identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409.
     0.915
SPO1029
Identified by match to protein family HMM PF04143.
 
     0.883
SPO1028
Identified by match to protein family HMM PF04143.
 
     0.880
SPO1030
Identified by match to protein family HMM PF00753.
 
     0.874
SPO1031
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
sulP
Sulfate permease; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
 
     0.441
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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