STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1027Putative protein TIGR01244; Identified by similarity to PIR:T10511; match to protein family HMM PF04273; match to protein family HMM TIGR01244. (143 aa)    
Predicted Functional Partners:
SPO1612
Twin-arginine translocation pathway signal sequence domain protein; Identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409.
     0.915
SPO1029
Identified by match to protein family HMM PF04143.
 
     0.901
SPO1028
Identified by match to protein family HMM PF04143.
 
     0.898
SPO1030
Identified by match to protein family HMM PF00753.
 
     0.872
SPO1031
Hypothetical protein; Identified by Glimmer2; putative.
       0.475
sulP
Sulfate permease; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
 
     0.432
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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