STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1030Identified by match to protein family HMM PF00753. (305 aa)    
Predicted Functional Partners:
SPO1029
Identified by match to protein family HMM PF04143.
 
     0.889
SPO1028
Identified by match to protein family HMM PF04143.
 
     0.876
SPO1027
Putative protein TIGR01244; Identified by similarity to PIR:T10511; match to protein family HMM PF04273; match to protein family HMM TIGR01244.
 
     0.874
SPO0577
Hypothetical protein; Identified by similarity to PIR:D83286.
    
 0.669
SPO1612
Twin-arginine translocation pathway signal sequence domain protein; Identified by similarity to GB:AAK03561.1; match to protein family HMM TIGR01409.
  
 0.642
SPO1031
Hypothetical protein; Identified by Glimmer2; putative.
       0.561
sulP
Sulfate permease; Identified by match to protein family HMM PF00916; match to protein family HMM PF01740; match to protein family HMM TIGR00815.
 
     0.554
SPO0989
Transcriptional regulator SoxR; Identified by match to protein family HMM PF01022.
 
   
 0.467
SPO3383
Thiol-specific antioxidant protein; Identified by similarity to GB:BAC00970.1; match to protein family HMM PF00578.
 
  
 0.447
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.