STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1032Hypothetical protein; Identified by Glimmer2; putative. (73 aa)    
Predicted Functional Partners:
SPO1033
Hypothetical protein; Identified by similarity to GB:BAB50739.1.
 
     0.750
SPO2595
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG035; identified in over 20 other Roseobacter strains'.
  
     0.734
SPO1354
Peptidoglycan binding domain protein; Identified by match to protein family HMM PF01471.
  
     0.718
SPO0311
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.716
SPO3632
Hypothetical protein; Identified by similarity to GB:BAC45762.1.
  
     0.716
SPO3441
Hypothetical protein; Identified by similarity to GB:AAC02256.1.
  
     0.689
SPO2924
Hypothetical protein; Identified by similarity to GB:BAC52505.1.
  
     0.667
phaP
Phasin, PhaP; Identified by similarity to GB:BAA77258.1.
  
     0.658
SPO3263
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.611
SPO0398
Hypothetical protein; Identified by similarity to GB:BAC45936.1.
  
     0.608
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.