Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1057Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165; match to protein family HMM TIGR01199. (332 aa)    
Predicted Functional Partners:
SPO1056
Hypothetical protein; Identified by similarity to GB:BAB50720.1.
 
     0.874
SPO1054
Hypothetical protein; Identified by similarity to PIR:AB1950.
 
     0.833
SPO1055
Membrane protein, putative.
       0.484
SPO0920
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.438
SPO2079
Na(+)/H(+) antiporter-like protein.
  
     0.427
SPO0328
Hypothetical protein; Identified by similarity to GB:BAB48523.1.
  
     0.417
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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