Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1059Serine/threonine protein kinase; Identified by match to protein family HMM PF00069. (703 aa)    
Predicted Functional Partners:
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
 
 
 
 0.979
SPO1064
Serine/threonine protein phosphatase, putative.
 
 
 0.911
SPO1060
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.789
SPO1069
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.752
SPO1068
Hypothetical protein; Identified by similarity to GB:CAE10435.1.
 
     0.749
SPO1061
LysM domain protein; Identified by match to protein family HMM PF01476.
 
  
 0.746
SPO1062
LysM domain protein; Identified by match to protein family HMM PF01476.
 
  
 0.643
SPO1065
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.621
SPO0163
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
 
 
 0.565
SPO3038
Sensor histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518.
 
 
 0.545
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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