Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1063Hypothetical protein; Identified by similarity to GB:AAS02340.1. (278 aa)    
Predicted Functional Partners:
SPO1059
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
 
 
 0.979
SPO1064
Serine/threonine protein phosphatase, putative.
 
 
 0.959
sucA
2-oxoglutarate dehydrogenase, E1 component; Identified by match to protein family HMM PF00676; match to protein family HMM PF02779; match to protein family HMM TIGR00239.
    
 
 0.840
SPO1065
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.825
SPO1281
Hypothetical protein; Identified by similarity to GB:CAE31790.1.
   
    0.813
SPO1062
LysM domain protein; Identified by match to protein family HMM PF01476.
 
  
 0.795
SPO1069
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.791
SPO1068
Hypothetical protein; Identified by similarity to GB:CAE10435.1.
 
     0.789
SPO1061
LysM domain protein; Identified by match to protein family HMM PF01476.
 
  
 0.766
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
 0.737
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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