STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1064Serine/threonine protein phosphatase, putative. (318 aa)    
Predicted Functional Partners:
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
 
 
 0.960
SPO1059
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
 
 0.921
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.912
SPO0585
Dehydrogenase/transketolase family protein.
  
 0.897
SPO1065
Hypothetical protein; Identified by Glimmer2; putative.
      0.796
SPO1069
Hypothetical protein; Identified by Glimmer2; putative.
 
     0.778
SPO1068
Hypothetical protein; Identified by similarity to GB:CAE10435.1.
 
     0.777
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
    
 
 0.712
SPO0847
Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.
  
 
 0.702
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
    
 0.664
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.