Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SPO1065Hypothetical protein; Identified by Glimmer2; putative. (458 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase complex, E1 component, beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.899
SPO0585
Dehydrogenase/transketolase family protein.
  
 0.868
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
  
 
 0.825
SPO1064
Serine/threonine protein phosphatase, putative.
      0.794
SPO3153
Monooxygenase, putative; Identified by similarity to GB:BAA61829.1; match to protein family HMM PF00173; match to protein family HMM PF01360.
    
 
 0.794
SPO2757
EF hand domain protein; Identified by match to protein family HMM PF00036.
    
 0.734
SPO0621
Ankrin repeat protein.
  
 0.721
SPO3323
Hypothetical protein; Identified by similarity to GB:CAC46974.1.
  
 
 0.709
SPO1793
Identified by match to protein family HMM PF00034; match to protein family HMM PF00400.
  
 
 0.700
SPO0425
MORN repeat protein; Identified by match to protein family HMM PF02493.
    
   0.675
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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