STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1068Hypothetical protein; Identified by similarity to GB:CAE10435.1. (300 aa)    
Predicted Functional Partners:
SPO1069
Hypothetical protein; Identified by Glimmer2; putative.
 
   
 0.958
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
 
     0.789
SPO1064
Serine/threonine protein phosphatase, putative.
 
     0.775
SPO1059
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
     0.749
SPO1061
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.667
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
    
 0.666
SPO1067
Hypothetical protein; Identified by Glimmer2; putative.
       0.651
SPO1060
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.649
SPO1062
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.623
rspI
Ribosomal protein S9; Identified by similarity to SP:P02363; match to protein family HMM PF00380; Belongs to the universal ribosomal protein uS9 family.
  
 0.611
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.