STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1069Hypothetical protein; Identified by Glimmer2; putative. (700 aa)    
Predicted Functional Partners:
SPO1068
Hypothetical protein; Identified by similarity to GB:CAE10435.1.
 
   
 0.959
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
  
  
 0.819
SPO1063
Hypothetical protein; Identified by similarity to GB:AAS02340.1.
 
    0.795
SPO1064
Serine/threonine protein phosphatase, putative.
 
     0.778
SPO1059
Serine/threonine protein kinase; Identified by match to protein family HMM PF00069.
 
     0.754
SPO1061
LysM domain protein; Identified by match to protein family HMM PF01476.
 
     0.686
SPO1466
Opine dehydrogenase, putative; Identified by similarity to SP:Q44297; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.673
gpsA
Glycerol-3-phosphate dehydrogenase (NAD(P)+); Identified by similarity to SP:P37606; match to protein family HMM PF01210; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
  
 0.673
SPO1060
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.651
SPO1067
Hypothetical protein; Identified by Glimmer2; putative.
       0.649
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.