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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1073Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401. (314 aa)    
Predicted Functional Partners:
SPO1075
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.957
SPO2384
Identified by match to protein family HMM PF01970.
 
  
 0.863
SPO0771
Identified by match to protein family HMM PF01970.
 
  
 0.862
SPO0184
Membrane protein, putative; Identified by match to protein family HMM PF01970.
 
  
 0.856
SPO1074
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
SPO0186
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
  
     0.668
SPO0185
Membrane protein, putative.
  
  
 0.594
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
     
 0.541
SPO1072
Putative protein TIGR01033; Identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033.
       0.491
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.