STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1074Hypothetical protein; Identified by Glimmer2; putative. (143 aa)    
Predicted Functional Partners:
SPO0185
Membrane protein, putative.
     
  0.900
SPO0770
Hypothetical protein; Identified by Glimmer2; putative.
     
  0.900
SPO1073
Bordetella uptake gene family protein; Identified by match to protein family HMM PF03401.
       0.773
SPO1075
Membrane protein, putative; Identified by match to protein family HMM PF01970.
       0.697
SPO1076
trkA-C domain protein; Identified by match to protein family HMM PF02080.
       0.537
SPO1072
Putative protein TIGR01033; Identified by similarity to PIR:AC3292; match to protein family HMM PF01709; match to protein family HMM TIGR01033.
       0.491
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.