SPO1077 protein (Ruegeria pomeroyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SPO1077

Identified by match to protein family HMM PF00881. (230 aa)

Predicted Functional Partners:

SPO3842

0.720

SPO1078

0.657

SPO0110

0.472

SPO0847

0.472

SPO1079

0.471

SPO2584

0.440

gltB

0.420

tadA

0.416

SPO0513

0.414

Your Current Organism:

Ruegeria pomeroyi

NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SPO0110	SPO0847	SPO0110	SPO0847	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.413
SPO0110	SPO1077	SPO0110	SPO1077	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Identified by match to protein family HMM PF00881.	0.472
SPO0110	gltB	SPO0110	SPO3768	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.413
SPO0513	SPO1077	SPO0513	SPO1077	Hypothetical protein; Identified by similarity to GB:BAC52410.1.	Identified by match to protein family HMM PF00881.	0.414
SPO0847	SPO0110	SPO0847	SPO0110	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	0.413
SPO0847	SPO1077	SPO0847	SPO1077	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Identified by match to protein family HMM PF00881.	0.472
SPO0847	gltB	SPO0847	SPO3768	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.559
SPO1077	SPO0110	SPO1077	SPO0110	Identified by match to protein family HMM PF00881.	ABC transporter, ATP binding/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF01061.	0.472
SPO1077	SPO0513	SPO1077	SPO0513	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by similarity to GB:BAC52410.1.	0.414
SPO1077	SPO0847	SPO1077	SPO0847	Identified by match to protein family HMM PF00881.	Non-ribosomal peptide synthetase; Identified by similarity to GB:CAC01603.1; match to protein family HMM PF00296; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR01733.	0.472
SPO1077	SPO1078	SPO1077	SPO1078	Identified by match to protein family HMM PF00881.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.657
SPO1077	SPO1079	SPO1077	SPO1079	Identified by match to protein family HMM PF00881.	L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.	0.471
SPO1077	SPO2584	SPO1077	SPO2584	Identified by match to protein family HMM PF00881.	Identified by match to protein family HMM PF00903.	0.440
SPO1077	SPO3842	SPO1077	SPO3842	Identified by match to protein family HMM PF00881.	Hypothetical protein; Identified by similarity to GB:AAN30579.1; match to protein family HMM PF01988.	0.720
SPO1077	gltB	SPO1077	SPO3768	Identified by match to protein family HMM PF00881.	Glutamate synthase, large subunit; Identified by similarity to SP:Q05755; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04897; match to protein family HMM PF04898.	0.420
SPO1077	tadA	SPO1077	SPO2983	Identified by match to protein family HMM PF00881.	Cytidine and deoxycytidylate deaminase family protein; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family.	0.416
SPO1078	SPO1077	SPO1078	SPO1077	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	Identified by match to protein family HMM PF00881.	0.657
SPO1078	SPO1079	SPO1078	SPO1079	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.	0.923
SPO1079	SPO1077	SPO1079	SPO1077	L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.	Identified by match to protein family HMM PF00881.	0.471
SPO1079	SPO1078	SPO1079	SPO1078	L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.	Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.	0.923

page 1 of 2

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Textmining

Fusion

Experiments

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About