Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SPO1080Membrane protein, putative; Identified by match to protein family HMM PF00892. (308 aa)    
Predicted Functional Partners:
SPO1081
Hypothetical protein; Identified by similarity to GB:AAM82654.1.
       0.741
SPO2923
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.687
SPO1079
L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.
       0.622
betC-1
Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884.
   
   0.597
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
       0.577
SPO1078
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
    0.452
SPO2507
Membrane protein, putative; Identified by match to protein family HMM PF00892.
  
     0.415
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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