STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1081Hypothetical protein; Identified by similarity to GB:AAM82654.1. (152 aa)    
Predicted Functional Partners:
SPO1080
Membrane protein, putative; Identified by match to protein family HMM PF00892.
       0.741
SPO3377
Hypothetical protein; Identified by similarity to GB:AAN30707.1.
  
     0.613
SPO1386
HIT family protein; Identified by match to protein family HMM PF01230.
  
     0.611
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
       0.601
betC-1
Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884.
       0.601
SPO1079
L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.
       0.584
SPO2498
2''-deoxycytidine 5''-triphosphate deaminase-like protein.
  
     0.581
SPO1267
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
     0.540
SPO0669
ATP phosphoribosyltransferase, putative; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
  
     0.481
SPO1856
Ribonuclease BN, putative; Identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765.
  
     0.458
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.