STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
betC-1Choline sulfatase; Identified by similarity to SP:O69787; match to protein family HMM PF00884. (502 aa)    
Predicted Functional Partners:
betI
HTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes.
 
   
 0.851
SPO1081
Hypothetical protein; Identified by similarity to GB:AAM82654.1.
       0.601
SPO1080
Membrane protein, putative; Identified by match to protein family HMM PF00892.
   
   0.597
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
  
 0.590
SPO1084
Hypothetical protein; Identified by similarity to GB:CAC41724.1.
  
    0.493
SPO1079
L-lysine exporter, putative; Identified by similarity to SP:P94633; match to protein family HMM PF01810.
       0.465
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.