STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1104Hypothetical protein; Identified by Glimmer2; putative. (333 aa)    
Predicted Functional Partners:
SPO1105
methylmalonyl-CoA mutase; Identified by similarity to SP:O86028; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
       0.859
SPO1103
Hypothetical protein; Identified by Glimmer2; putative.
       0.646
SPO1107
Phosphinothricin N-acetyltransferase, putative; Identified by similarity to SP:P21861; match to protein family HMM PF00583.
       0.529
SPO1106
Hypothetical protein; Identified by similarity to PIR:B75327.
       0.522
SPO2944
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.501
SPO2845
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.490
SPO2574
Sensor histidine kinase; Identified by similarity to SP:P13799; match to protein family HMM PF02518.
  
     0.447
SPO1108
DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226.
       0.441
SPO0725
Bacterial SH3 domain family protein.
  
     0.439
SPO1061
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.436
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.