STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1108DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226. (226 aa)    
Predicted Functional Partners:
SPO1683
Hypothetical protein; Identified by similarity to GB:AAK22449.1.
  
 
 0.976
SPO2024
Aminotransferase; 'initially identified as a pseudogene, expression verified by proteomics'.
 
 
 0.842
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 
 0.841
SPO0092
Heat shock protein, Hsp70 family; Identified by similarity to SP:P36928.
  
 
 0.791
SPO1107
Phosphinothricin N-acetyltransferase, putative; Identified by similarity to SP:P21861; match to protein family HMM PF00583.
       0.784
SPO1109
Identified by match to protein family HMM PF03372.
       0.774
SPO1106
Hypothetical protein; Identified by similarity to PIR:B75327.
       0.701
SPO2506
Iron-sulfur cluster assembly family protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
  
 
 0.690
SPO2620
Iron-sulfur cluster assembly accessory protein; Identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; Belongs to the HesB/IscA family.
  
 
 0.690
SPO1105
methylmalonyl-CoA mutase; Identified by similarity to SP:O86028; match to protein family HMM PF01642; match to protein family HMM PF02310; match to protein family HMM TIGR00640; match to protein family HMM TIGR00641.
  
    0.682
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.