STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1109Identified by match to protein family HMM PF03372. (337 aa)    
Predicted Functional Partners:
SPO1108
DnaJ-like protein DjlA, putative; Identified by similarity to SP:P31680; match to protein family HMM PF00226.
       0.773
SPO3321
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.710
SPO1120
Hypothetical protein; Identified by similarity to PIR:T10512.
  
     0.702
SPO2673
Paraquat-inducible protein A, putative; Identified by match to protein family HMM PF04403.
  
     0.690
SPO1974
Autoinducer-binding transcriptional regulator, LuxR family; Identified by match to protein family HMM PF00196; match to protein family HMM PF03472.
  
     0.675
SPO1106
Hypothetical protein; Identified by similarity to PIR:B75327.
     
 0.642
SPO1107
Phosphinothricin N-acetyltransferase, putative; Identified by similarity to SP:P21861; match to protein family HMM PF00583.
       0.642
SPO0055
OmpA domain protein; Identified by match to protein family HMM PF00691.
 
  
 0.641
SPO0718
Hypothetical protein; Identified by similarity to GB:AAK08138.1.
  
     0.636
SPO3814
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.630
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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