Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1110Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family. (300 aa)    
Predicted Functional Partners:
SPO1112
TRAP transporter, periplasmic protein; Identified by match to protein family HMM PF03480.
 
     0.876
SPO1113
TRAP transporter, transmembrane protein, putative; Assignment based partly on membership in a TRAP-T gene trio; identified by similarity to GB:CAE33493.1.
 
     0.861
SPO1111
Hypothetical protein; Identified by similarity to GB:CAE33489.1; match to protein family HMM PF07286; Belongs to the D-glutamate cyclase family.
 
     0.792
SPO1114
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
    0.750
SPO3192
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.692
SPO2105
Transcriptional regulator, LysR family; Identified by similarity to SP:P52677; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.685
SPO3668
Transcriptional regulator, LysR family; Identified by similarity to SP:P03030; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.685
SPO0206
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.662
SPO1115
Hypothetical protein; Identified by similarity to GB:CAE33491.1.
 
     0.650
SPO0033
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.626
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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