STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1114TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786. (428 aa)    
Predicted Functional Partners:
SPO1113
TRAP transporter, transmembrane protein, putative; Assignment based partly on membership in a TRAP-T gene trio; identified by similarity to GB:CAE33493.1.
 
 
 0.958
SPO1112
TRAP transporter, periplasmic protein; Identified by match to protein family HMM PF03480.
 
  
 0.925
SPO1115
Hypothetical protein; Identified by similarity to GB:CAE33491.1.
 
     0.878
SPO2545
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
  
 0.754
SPO1110
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
    0.750
SPO1111
Hypothetical protein; Identified by similarity to GB:CAE33489.1; match to protein family HMM PF07286; Belongs to the D-glutamate cyclase family.
 
     0.711
SPO1721
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.
  
 0.594
SPO2573
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.507
dctP
TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
 
  
 0.482
hpsL
Dihydroxypropanesulfonate (DHPS) TRAP transporter; PMID: 20150239.
 
 
 0.481
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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