Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1117Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541. (514 aa)    
Predicted Functional Partners:
SPO3203
guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase, putative; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
 
 0.940
SPO1859
Phosphatase, Ppx/GppA family; Identified by match to protein family HMM PF02541.
  
  
0.928
SPO1118
Hypothetical protein; Identified by similarity to GB:BAC49388.1.
       0.717
SPO1119
Identified by match to protein family HMM PF01594.
       0.717
SPO3873
ATP-dependent DNA helicase, UvrD/Rep family; Identified by match to protein family HMM PF00580; Belongs to the helicase family. UvrD subfamily.
  
     0.673
SPO3431
Hypothetical protein; Identified by similarity to GB:AAK25710.1.
  
     0.538
SPO2490
Lipoprotein, SmpA/OmlA family; Identified by match to protein family HMM PF04355.
  
     0.491
SPO0690
Hypothetical protein; Identified by similarity to GB:BAC48339.1.
  
     0.475
SPO2129
Hypothetical protein; Identified by similarity to PIR:F87495.
  
     0.472
obg
GTP-binding protein, GTP1/OBG family; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family.
     
 0.446
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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