STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1126Cytochrome c family protein. (130 aa)    
Predicted Functional Partners:
SPO1127
Identified by match to protein family HMM PF00034.
 
 
 0.959
SPO1125
Hypothetical protein; Identified by Glimmer2; putative.
 
 
0.840
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
 
 0.804
ccoN-1
Cytochrome c oxidase, cbb3-type, subunit I; Identified by similarity to SP:P98059; match to protein family HMM PF00115; match to protein family HMM TIGR00780; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.780
SPO2135
Hypothetical protein; Identified by similarity to GB:BAC50222.1.
  
     0.701
lolE
Lipoprotein releasing system transmembrane protein LolE; Identified by similarity to SP:P75956; match to protein family HMM PF02687.
       0.660
lolD
Lipoprotein releasing system ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
       0.657
SPO3223
Response regulator; Identified by match to protein family HMM PF00072.
  
     0.612
SPO0942
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.606
soxD
Diheme cytochrome c SoxD; Identified by similarity to PIR:T46966; match to protein family HMM PF00034.
  
 
 0.560
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.