STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1128Hypothetical protein; Identified by Glimmer2; putative. (266 aa)    
Predicted Functional Partners:
SPO1129
Hypothetical protein; Identified by similarity to PIR:D83497.
       0.654
SPO2647
Hypothetical protein; Identified by similarity to PIR:F95909.
  
     0.647
SPO3502
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.600
SPO2649
Hypothetical protein; Identified by similarity to GB:CAB52234.1.
  
     0.599
SPO2598
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.596
SPO2776
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.562
SPO2648
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.550
SPO3503
Hypothetical protein; Identified by similarity to GB:AAC44076.1.
  
     0.523
SPO1130
Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369.
       0.515
SPO3452a
Hypothetical protein; 'Novel gene detected by proteogenomics, SPO_PG015; similar gene identified in less than 5 other Roseobacter strains'.
  
     0.501
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.