Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1130Identified by match to protein family HMM PF03061; match to protein family HMM TIGR00369. (135 aa)    
Predicted Functional Partners:
SPO1129
Hypothetical protein; Identified by similarity to PIR:D83497.
       0.599
SPO1688
Thioesterase family protein; Identified by similarity to GB:AAN29721.1; match to protein family HMM PF03061; match to protein family HMM TIGR00369.
 
     0.552
SPO1128
Hypothetical protein; Identified by Glimmer2; putative.
       0.515
SPO0212
Hypothetical protein; Identified by similarity to PIR:G97622.
 
     0.511
SPO1131
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.
       0.497
SPO1132
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
       0.490
SPO1133
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P14176; match to protein family HMM PF00528.
       0.490
SPO0226
Cytochrome P450 family protein.
 
     0.453
SPO3651
Fatty acid desaturase family protein; Identified by match to protein family HMM PF00487.
 
    0.426
SPO3481
Membrane protein, putative.
 
     0.424
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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