STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1133Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P14176; match to protein family HMM PF00528. (687 aa)    
Predicted Functional Partners:
SPO1132
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
 
 0.996
SPO1131
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.
 
 
 0.995
SPO1549
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
 
 0.983
SPO2443
Glycine betaine/proline ABC transporter, ATP-binding protein; Identified by similarity to SP:P46920; match to protein family HMM PF00005.
 
 0.981
SPO1548
Glycine betaine/proline ABC transporter, periplasmic substrate-binding protein; Identified by match to protein family HMM PF04069.
 
 
 0.976
SPO2441
Glycine betaine/proline ABC transporter, periplasmic glycine betaine/proline-binding protein; Identified by similarity to GB:AAF78097.1; match to protein family HMM PF04069.
 
 0.966
SPO2442
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P14176; match to protein family HMM PF00528.
  
  
 
0.924
SPO1550
Glycine betaine/proline ABC transporter, permease protein; Identified by similarity to SP:P46921; match to protein family HMM PF00528.
  
  
 
0.922
SPO1134
Identified by match to protein family HMM PF07298.
       0.547
upgC
SN-glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
     
  0.540
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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