STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
doeXAsnC/Lrp-like DNA-binding protein, transcriptional regulator; Identified by match to protein family HMM PF01037; PMID: 19362561. (159 aa)    
Predicted Functional Partners:
doeA
Ectoine hydrolase; Identified by similarity to SP:P55667; PMID: 19362561.
 
 
 
 0.906
doeB
N -acetyl-L-2,4-diaminobutyric acid deacetylase; Identified by match to protein family HMM PF04952; PMID: 19362561.
 
   
 0.888
doeC
Aspartate-semialdehyde dehydrogenase; Identified by similarity to SP:P25526; match to protein family HMM PF00171; match to protein family HMM TIGR01780.
 
  
 0.844
doeD
Diaminobutyric acid transaminase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.817
SPO1142
Threonine dehydratase, putative; Identified by match to protein family HMM PF00291.
 
   
 0.752
eutC
Identified by match to protein family HMM PF02423; PMID: 19362561.
 
     0.751
SPO2624
Transcriptional regulator, AsnC family; Identified by match to protein family HMM PF01037; match to protein family HMM TIGR01199.
  
     0.735
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.720
uehB
Ectoine/5-hydroxyectoine TRAP transporter, small integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter small permease family.
 
     0.713
SPO1144
Identified by match to protein family HMM PF00582.
     
 0.681
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.