STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1144Identified by match to protein family HMM PF00582. (145 aa)    
Predicted Functional Partners:
uehB
Ectoine/5-hydroxyectoine TRAP transporter, small integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter small permease family.
 
     0.951
uehC
Ectoine/5-hydroxyectoine TRAP transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter large permease family.
 
     0.920
uehA
Ectoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family.
 
     0.891
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.831
eutC
Identified by match to protein family HMM PF02423; PMID: 19362561.
       0.743
SPO1142
Threonine dehydratase, putative; Identified by match to protein family HMM PF00291.
       0.732
doeB
N -acetyl-L-2,4-diaminobutyric acid deacetylase; Identified by match to protein family HMM PF04952; PMID: 19362561.
       0.707
doeA
Ectoine hydrolase; Identified by similarity to SP:P55667; PMID: 19362561.
       0.689
doeX
AsnC/Lrp-like DNA-binding protein, transcriptional regulator; Identified by match to protein family HMM PF01037; PMID: 19362561.
     
 0.681
gntR
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; PMID: 19362561.
 
     0.518
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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