Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
uehAEctoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family. (339 aa)    
Predicted Functional Partners:
uehB
Ectoine/5-hydroxyectoine TRAP transporter, small integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter small permease family.
 
  
 0.921
uehC
Ectoine/5-hydroxyectoine TRAP transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter large permease family.
 
  
 0.910
SPO1144
Identified by match to protein family HMM PF00582.
 
     0.891
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.767
SPO1142
Threonine dehydratase, putative; Identified by match to protein family HMM PF00291.
 
     0.640
gntR
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392; PMID: 19362561.
 
     0.619
doeA
Ectoine hydrolase; Identified by similarity to SP:P55667; PMID: 19362561.
 
     0.611
SPO2547
TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808; match to protein family HMM TIGR00786.
 
  
 0.598
doeB
N -acetyl-L-2,4-diaminobutyric acid deacetylase; Identified by match to protein family HMM PF04952; PMID: 19362561.
 
   
 0.593
eutC
Identified by match to protein family HMM PF02423; PMID: 19362561.
 
     0.593
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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