Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
gntRTranscriptional regulator, GntR family; Identified by match to protein family HMM PF00392; PMID: 19362561. (464 aa)    
Predicted Functional Partners:
doeB
N -acetyl-L-2,4-diaminobutyric acid deacetylase; Identified by match to protein family HMM PF04952; PMID: 19362561.
 
     0.625
uehA
Ectoine/5-hydroxyectoine TRAP transporter, large integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. UehA binds both ectoine and 5-hydroxyectoine with high specificity and affinity. Belongs to the bacterial solute-binding protein 7 family.
 
     0.619
uehB
Ectoine/5-hydroxyectoine TRAP transporter, small integral membrane protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter small permease family.
 
     0.533
SPO1144
Identified by match to protein family HMM PF00582.
 
     0.518
eutA
Ectoine utilization protein EutA; Identified by match to protein family HMM PF01177; PMID: 19362561.
 
     0.511
doeA
Ectoine hydrolase; Identified by similarity to SP:P55667; PMID: 19362561.
 
     0.496
uehC
Ectoine/5-hydroxyectoine TRAP transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system UehABC, which imports both ectoine and 5- hydroxyectoine as nutrients, and not as osmoprotectants. Belongs to the TRAP transporter large permease family.
 
    0.476
SPO1142
Threonine dehydratase, putative; Identified by match to protein family HMM PF00291.
     
 0.416
eutC
Identified by match to protein family HMM PF02423; PMID: 19362561.
     
 0.412
doeD
Diaminobutyric acid transaminase; Identified by match to protein family HMM PF00202; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
   
 0.405
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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