Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SPO1153CoA-binding domain protein; Identified by match to protein family HMM PF02629. (158 aa)    
Predicted Functional Partners:
SPO1431
O-acetylhomoserine aminocarboxypropyltransferase; Identified by similarity to GB:BAB68505.1; match to protein family HMM PF01053; match to protein family HMM TIGR01326.
      0.866
SPO0413
Cys/Met metabolism PLP-dependent enzyme family protein; Identified by match to protein family HMM PF01053.
      0.715
metZ
O-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide.
      0.544
SPO1152
Twin-arginine translocation pathway signal sequence domain protein, putative; Identified by similarity to PIR:E82434; match to protein family HMM TIGR01409.
       0.466
zur
Zinc uptake regulation protein; Part of a zinc ABC transporter gene cluster; identified by similarity to SP:P32692; Belongs to the Fur family.
  
    0.431
mur
Manganese uptake regulator; Identified by match to protein family HMM PF01475; Belongs to the Fur family.
  
    0.431
SPO1150
RNA methyltransferase, TrmH family, group 3; Identified by match to protein family HMM PF00588; match to protein family HMM TIGR00186; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.413
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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